Bibliography |
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REFERENCES
Abbas B, Bintoro MH, Sudarosono, Surahman M, Ehara H. 2009. Genetic relationship of sago palm (Metroxylon sagu Rottb.) in Indonesia based on RAPD markers. Biodiversitas 10 (4): 168-174. DOI: 10.13057/biodiv/d100402
Abbas B, Renwarin Y, Bintoro MH, Sudarsono, Surahman M, Ehara H. 2010. Genetic Diversity of Sago Palm in Indonesia Based on Chloroplast DNA (CpDNA) Markers. Biodiversitas 11 (3): 112-17. DOI: 10.13057/biodiv/d110302.
Abbas B, Tjolli I, Dailami M, Munarti. 2019. Phylogenetic of sago palm (Metroxylon sagu) and others monocotyledon based on mitochondrial Nad2 gene markers. Biodiversitas 20 (8): 2249-2256. DOI: 10.13057/biodiv/d200820.
Abbas B. 2018. Sago palm genetic resource diversity in Indonesia. In: Ehara H, Toyoda Y, Johnson D. (eds.). Sago Palm: Multiple Contributions to Food Security and Sustainable Livelihoods. Springer, Singapore.
Beccari O. 1918. Asiatic palms. Lepidocaryeae. Ann Roy Bot Gard Calcutta 12: 156-195.
Chase MW, Cowan RS, Hollingsworth PM, Berg CVD, Madrin’an S, Petersen G, Seberg O, Jorsensen T, Cameron KM, Carine M, Pedersen N, Hedderson TAJ, Conrad F, Salazar GA, Richardson JE, Hollingsworth ML, Barraclough TG, Kelly L, Wilkinson M. 2007. A proposal for a standardized protocol to barcode all land plants. Taxon 56: 295-299.
Darracq A, Varre JS, Drouard LM, Courseaux A, Castric V, Laprade PS, Oztas S, Lenoble P, Barbe B, Touzet P. 2011. Structural and content diversity of mitochondrial genome in beet: A comparative genomic analysis. Genome Biol Evol 3: 723-736
Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
Genievskaya Y, Abugalieva S, Zhubanysheva A, Turuspekov Y. 2017. Morphological description and DNA barcoding study of sand rice (Agriophyllum squarrosum, Chenopodiaceae) collected in Kazakhstan. BMC Plant Biol 17 (1): 177-185. DOI 10.1186/s12870-017-1132-1.
Harnelly E, Thomy Z, Fathiya N. 2018. Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes. Biodiversitas 19: 1074-1080. DOI: 10.13057/biodiv/d190340.
Hollingsworth PM, Graham SW, Little DP. 2011. Choosing and Using a Plant DNA Barcode. PLoS ONE. 6 (5): 1-13.
Karim AA, Pei-Lang Tie A, Manan DMA, Zaidul ISM. 2008. Starch from the sago (Metroxylon sagu) palm tree-properties, prospects and challenges as a source for food and other uses. Compr Rev Food Sci Food Saf 7: 215-228.
Kress WJ, Erickson DL. 2008. DNA DNA barcoding: Genes, genomics, and bioinformatics. Proc Natl Acad Sci USA 105: 2761-2762.
Kress W J, Erickson DL. 2007. A two-locus global DNA barcode for land plants: The coding rbcL gene complements the noncoding trnH-psbA spacer region. PLoS ONE 2: e508. DOI: 10.1371/journal.pone.0000508.
Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. 2005. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102: 8369-8374.
Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol 33: 1870-1874.
Kuzmina ML, Johnson KL, Barron HR, Herbert PDN. 2012. Identification of vascular plants of Churchill, Manitoba, using a DNA barcode library. BMC Ecology 12 (25): 1-11. DOI: 10.1186/1472-6785-12-25.
Lahaye R, Bank MVD, Bogarin D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V. 2008. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA 105 (8): 2761-2762.
Liston A. 1992. Variation in the chloroplast genes RPOC1 and RPOC2 of the genus Astragalus (Fabaceae): Evidence from restriction site mapping of a PCR amplified fragment. Am J Bot 79: 953-961.
Nei M, Gojobori T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
Nei M, Kumar S. 2000. Molecular Evolution and Phylogenetics. Oxford University Press, New York.
Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powel W. 1999. A low mutation rate for chloroplast microsatellites. Genetics 153: 943-947.
Riyanto R, Widodo I, Abbas B. 2018. Morphology, growth and genetic variations of sago palm (Metroxylon sagu) seedlings derived from seeds. Biodiversitas 19: 602-608. DOI: 10.13057/biodiv/d190241.
Rzhetsky A, Nei M. 1992. A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9: 945-967.
Saddhe AA, Jamdade AR, Kumar K. 2016. Assessment of mangroves from Goa, west coast India using DNA barcode. SpringerOpen 5: 1554-1564. DOI: 10.1186/s40064-016-3191-4.
Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
Savolainen V, Corbaz R, Moncousin C, Spchiger R, Manen JF. 1995. Chloroplast DNA variation and parentage analysis in 55 apples. Theor Appl Genet 90: 1138-1141.
Selvaraj D, Sarma RK, Sathishkumar R. 2008. Phylogenetic analysis of chloroplast matK gene from Zingiberaceae for plant DNA barcoding. Bioinformation 3 (1): 24-27.
Singh J, Banerjee S. 2018. Utility of DNA barcoding tools for conservation and molecular identification of intraspecies of rice genotypes belonging to Chhattisgarh using rbcL and matK gene sequences. Plant Arch 18: 69-75.
Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, Vermat T, Corthier, Brochmann C, Willerslev E. 2007. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res 35 (3): 1-8. DOI: 10.1093/nar/gkl938
Tajima F. 1989. Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics 123 (3): 585-595.
Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526.
Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101: 11030-11035.
Tsumura Y, Yoshimura K, Tomaru N, Ohba K. 1995. Molecular phylogeny of conifer using RFLP analysis of PCR-amplified specific chloroplast genes. Theor Appl Genet 91: 1222-1236.
Viard F, El-Kassaby YA, Ritland A. 2001. Diversity and genetic structure in populations of Pseudotsuga menziesii (Pinaceae) at chloroplast microsatellite loci. Genome 44: 336-344.
Yater T, Tubur HW, Meliala C, Abbas B. 2019. Short Communication: A comparative study of phenotypes and starch production in sago palm (Metroxylon sagu) growing naturally in temporarily inundated and non-inundated areas of South Sorong, Indonesia. Biodiversitas 20: 1121-1126. DOI: 10.13057/biodiv/d200425.
Zebua LI, Gunaedi T, Budi IM, Lunga N. 2019. The DNA barcode of red fruit pandan (Pandanaceae) cultivar from Wamena, Papua Province, Indonesia based on matK gene. Biodiversitas 20: 3405-3412. DOI: 10.13057/biodiv/d2011 38.
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